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Land use and agricultural practices can result in important contributions to the global source strength of atmospheric nitrous oxide (N₂O) and methane (CH₄). However, knowledge of gas flux from irrigated agriculture is very limited. From April 2005 to October 2006, a study was conducted in the Aral Sea Basin, Uzbekistan, to quantify and compare emissions of N₂O and CH₄ in various annual and perennial land-use systems: irrigated cotton, winter wheat and rice crops, a poplar plantation and a natural Tugai (floodplain) forest. In the annual systems, average N₂O emissions ranged from 10 to 150 μg N₂O-N m⁻² h⁻¹ with highest N₂O emissions in the cotton fields, covering a similar range of previous studies from irrigated cropping systems. Emission factors (uncorrected for background emission), used to determine the fertilizer-induced N₂O emission as a percentage of N fertilizer applied, ranged from 0.2% to 2.6%. Seasonal variations in N₂O emissions were principally controlled by fertilization and irrigation management. Pulses of N₂O emissions occurred after concomitant N-fertilizer application and irrigation. The unfertilized poplar plantation showed high N₂O emissions over the entire study period (30 μg N₂O-N m⁻² h⁻¹), whereas only negligible fluxes of N₂O (